5,000-gene panels
Explore diverse biological functions in human and mouse
Add on up to 100 custom genes
Why choose 5,000-gene panels
Large-scale exploration across tissues and organs
Expertly curated panels include targets for cell typing, disease areas, and drug targets
Assay specifications
Mouse
Human
Species
FFPE tissue
Fresh frozen tissue
Tumor microarrays (TMAs)
Compatible samples
Probe-based gene expression
Protein (IF)
Morphology (H&E)
Same section capabilities
Customization
Add on up to 100 custom genes
Compatible instruments
Throughput options
2 Xenium slides per run (up to 472 mm² of tissue) <6 days per run
Ready-to-use panel options
Xenium Prime 5K Human Pan Tissue & Pathways Panel
Enables high-plex analysis of biological pathways, receptor–ligand pairs, cell–cell interactions, biomarkers, and more.
5006 genes on panel
Up to 100 add-on genes
Xenium Prime 5K Mouse Pan Tissue & Pathways Panel
Enables high-plex analysis of biological pathways, receptor–ligand pairs, cell–cell interactions, biomarkers, and more.
5006 genes on panel
Up to 100 add-on genes
Find a Xenium panel
The Xenium Panel Selector helps you find the right panel, letting you filter by and/or enter genes to check overlap with 10x Genomics pre-designed panels. It also highlights genes for custom add-on panels.
Assay components
Consumables
Xenium Prime 5K
1000671
Xenium Prime 5K Human Pan Tissue and Pathways Assay Kit (2 rxns)
1000672
Xenium Prime 5K Mouse Pan Tissue and Pathways Assay Kit (2 rxns)
1000731
Xenium Prime 5K Add-on Custom up to 50 Gene Panel (12 rxns)
1000766
Xenium Prime 5K Add-on Custom 51 to 100 Gene Panel (12 rxns)
1000739
Xenium Thermocycler Adaptor v2
Training
1000632
Xenium Analyzer Premium 3-Day Training Visit
Documents and resources
Sample prep
Customization
Technical notes
Analysis guides
Resources
Multimodal spatial reconstruction of autoimmune diseases with 5,000-gene assays
In situ detection of HPV expression in human cervical cancer with Xenium Prime 5K
How TGen drastically reduced Xenium per-sample costs for large cohorts with tumor microarrays
Data analysis
Xenium Onboard Analysis
The Xenium platform processes data in parallel with imaging and biochemistry cycles, allowing immediate access to interpretation-ready data without time-consuming steps post-run.
Xenium Ranger
With compatibility across multiple Linux distributions, the Xenium Ranger analysis pipelines make it easy to reanalyze your Onboard Analysis data and visualize it in Xenium Explorer.
Xenium Explorer
Xenium Explorer is a desktop application for Windows and MacOS that allows you to interactively visualize data generated by the Xenium Analyzer instrument.
Featured datasets
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