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Visium Human Transcriptome Probe Set v1.0

Visium Human Transcriptome Probe Set v1.0

Visium probe sets are bundled with the Space Ranger software. Both Space Ranger and individual probe sets can be downloaded here.

Probe Set Contents

  • 19,144 gene_ids targeted by 19,902 probes.

    • 1,201 (6.3%) of these gene_ids (targeted by 1,272 probes) are excluded by default due to predicted off-target activity to a different gene. See the probe filter section of the Space Ranger algorithms overview for more details.
    • 17,943 gene_ids (targeted by 18,630 probes) are present in the final filtered output.

The gene_id information is included in the probe set reference CSV file.

Accompanying Probe Set Files

  • Visium Human Transcriptome Probe Set v1.0 - Probe Set Reference CSV file
  • Visium Human Transcriptome Probe Set v1.0 - BED file
  • Visium Human Transcriptome Probe Set v1.0 - Probe Off-target CSV file
  • Visium Human Transcriptome Probe Set v1.0 - Probe Set Metadata TSV file

These files are downloadable from the software downloads section.

For details on the file formats, see the probe set file descriptions.

Associated Part Numbers

  • Visium Human Transcriptome Probe Kit, Large PN-1000364
  • Visium Human Transcriptome Probe Kit, Small PN-1000363
Document Type
Specifications

Last Modified
June 10, 2024