10x Genomics Support/Single Cell Gene Expression Flex/Documentation/Sequencing/

Flowcell Capacity Calculator

  • CG000604_Flowcell_Capacity_Calculator_RevA.xlsx

    User Guide, CG000604


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This spreadsheet can be used calculate the total reads required to sequence a pool of 10x Genomics Single Cell libraries, and to select an Illumina platform and flow cell with sufficient read output. Select an appropriate Illumina reagent kit with enough cycles for the desired run configuration. Not all library types can be pooled and sequenced together. This calculator will NOT call out incompatibilities. Please refer to assay user guides and the 10x Genomics support website (10xgenomics.com/support) for recommended read depths per cell across each library type and for information on which libraries can be pooled together.

Document Type
User Guide

Last Modified
August 12, 2022