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chromium
Single Cell Gene Expression Flex
chromium
Single Cell 3' Gene Expression
chromium
Single Cell Immune Profiling
Single Cell Gene Expression Flex

Our most sensitive whole transcriptome gene expression, compatible with fresh or fixed samples (including FFPE), with flexibility to fix, batch, and run samples on your schedule

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Single Cell 3' Gene Expression

A versatile solution providing 3' gene expression with options for multiomic analysis

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Single Cell Immune Profiling

Comprehensive analysis of immune diversity, combining 5' gene expression with multiomic profiling

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Primary Capability

Probe-based Gene ExpressionProbe-based Gene Expression

Gene expression analysis using custom or pre-designed probes

3' Gene Expression3' Gene Expression

Detect and quantify RNA molecules near the 3' end of genes

5' Gene Expression5' Gene Expression

Detect and quantify RNA molecules near the 5' end of genes

Multiomic Capabilities

Cell Surface ProteinCell Surface Protein

Identify proteins to categorize cell types, pinpoint biomarkers, and explore cell signaling and interactions

Cell Surface ProteinCell Surface Protein

Identify proteins to categorize cell types, pinpoint biomarkers, and explore cell signaling and interactions

CRISPR ScreeningCRISPR Screening

Assess effects of CRISPR perturbations at single cell resolution with direct capture of cellular sgRNAs and changes in gene expression

Cell Surface ProteinCell Surface Protein

Identify proteins to categorize cell types, pinpoint biomarkers, and explore cell signaling and interactions

CRISPR ScreeningCRISPR Screening

Assess effects of CRISPR perturbations at single cell resolution with direct capture of cellular sgRNAs and changes in gene expression

TCR/BCR SequencingTCR/BCR Sequencing

Understand clonal expansion and diversity by capturing full-length, paired B-cell and T-cell receptors

Antigen SpecificityAntigen Specificity

Obtain comprehensive antigen-specific cellular profiles to identify rare, antigen-reactive T and B cells

Compatible Species

Human
Human
Mouse
Mouse
Additional Species
Additional SpeciesWith custom probes
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Human
Human
Mouse
Mouse
Rat
Rat
Non-Human Primate
Non-Human Primate
Marine
Marine
Plant
Plant
Insect
Insect
Human
Human
Mouse
Mouse
Rat
RatExcept with TCR/BCR Sequencing
Non-Human Primate
Non-Human PrimateExcept with TCR/BCR Sequencing

Assay Input

Cells
Cells
Nuclei
Nuclei
Cells
Cells
Nuclei
Nuclei
Cells
Cells

Resolution

Whole Cell/NucleusWhole Cell/Nucleus

Cells or nuclei are partitioned into GEM Gel Beads that uniquely barcode each, enabling single cell resolution

Learn about Next GEM Technology
Whole Cell/NucleusWhole Cell/Nucleus

Cells or nuclei are partitioned into GEM Gel Beads that uniquely barcode each, enabling single cell resolution

Learn about Next GEM Technology
Whole CellWhole Cell

Cells or nuclei are partitioned into GEM Gel Beads that uniquely barcode each, enabling single cell resolution

Learn about Next GEM Technology

Run Configuration Options

Multiplexed
Multiplexed

Compatible Instruments

Chromium X and iXChromium X and iX

Access single cell analysis at any stage. From Chromium iX, offering cost-effective, lower throughput single cell analysis, upgradable to the high-throughput full-range Chromium X, we make single cell analysis a perfect fit.

Discover the Chromium X Series
Chromium X and iXChromium X and iX

Access single cell analysis at any stage. From Chromium iX, offering cost-effective, lower throughput single cell analysis, upgradable to the high-throughput full-range Chromium X, we make single cell analysis a perfect fit.

Discover the Chromium X Series
Chromium ControllerChromium Controller

Chromium X and iXChromium X and iX

Access single cell analysis at any stage. From Chromium iX, offering cost-effective, lower throughput single cell analysis, upgradable to the high-throughput full-range Chromium X, we make single cell analysis a perfect fit.

Discover the Chromium X Series
Chromium ControllerChromium Controller

Included Data Processing & Analysis Software

Cell RangerCell Ranger

Cell Ranger is a set of free analysis pipelines for processing Chromium Single Cell data on-prem.

Learn about Running Cell Ranger
Cloud AnalysisCloud Analysis

A platform for running 10x analysis pipelines on optimized cloud clusters for a quick and easy path to results.

Discover Cloud Analysis
Cell RangerCell Ranger

Cell Ranger is a set of free analysis pipelines for processing Chromium Single Cell data on-prem.

Learn about Running Cell Ranger
Cloud AnalysisCloud Analysis

A platform for running 10x analysis pipelines on optimized cloud clusters for a quick and easy path to results.

Discover Cloud Analysis
Cell RangerCell Ranger

Cell Ranger is a set of free analysis pipelines for processing Chromium Single Cell data on-prem.

Learn about Running Cell Ranger
Cloud AnalysisCloud Analysis

A platform for running 10x analysis pipelines on optimized cloud clusters for a quick and easy path to results.

Discover Cloud Analysis

Included Interactive Visualization Tools

Loupe BrowserLoupe Browser

Visualize and interpret Chromium single cell gene expression data with Loupe Browser, a visualization tool that enables identification of gene expression patterns and cell clusters.

Dive into Data with Loupe Browser
Loupe BrowserLoupe Browser

Visualize and interpret Chromium single cell gene expression data with Loupe Browser, a visualization tool that enables identification of gene expression patterns and cell clusters.

Dive into Data with Loupe Browser
Loupe V(D)J BrowserLoupe V(D)J Browser

Investigate clonotypes and examine V(D)J transcripts in Single Cell Immune Profiling data with this interactive visualization tool.

Download Loupe V(D)J
Loupe BrowserLoupe Browser

Interactively explore clonotype information and repertoire diversity alongside gene expression data in Loupe Browser.

Dive into Data with Loupe Browser
Loupe V(D)J BrowserLoupe V(D)J Browser

Investigate clonotypes and examine V(D)J transcripts in Single Cell Immune Profiling data with this interactive visualization tool.

Download Loupe V(D)J