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Up to 384 samples a week in 96-well format
Exceptional performance with challenging samples
Why choose Apex
Running large-scale studies with minimized handling
Scaling at your pace with the ability to run partial plates
Detecting more genes with less sequencing
Assay specifications
Mouse
Human
Other species with custom probes
Species
Cell suspension
Nuclei suspension
Fresh tissue
Frozen tissue
FFPE tissue
PFA-fixed tissue
Flow-sorted cells
Fixed whole blood
Organoids
Compatible samples
Probe-based gene expression
Cell surface protein
Intracellular protein
CRISPR screening
Multiomics
Compatible instruments
20K cells/sample
160K cells/chip
8 samples/chip
Singleplex throughput options
20K cells/sample
8M cells/chip
3,072 samples/chip
Plate-based multiplexing throughput options
Components
Consumables
Choose a version
Nuclei Isolation (optional)
1000494
Chromium Nuclei Isolation with RNase Inhibitor Kit, 16rxns
Sample Prep Kit
1000781
GEM-X Flex Sample Preparation v2 Kit, 48 rxns
Individual Wash Workflow (optional)
1000828
GEM-X Flex Supplemental Wash Kit, 64 rxns
Chip
1000791
GEM-X Flex Gene Expression Chip Kit, 4 chips
Index Kit
1000251
Dual Index Kit TS Set A, 96 rxn
1000215
Dual Index Kit TT Set A 96 rxns
1000250
Dual Index Kit TN Set A, 96 rxn
Core Reagents
1000926
GEM-X Flex v2 Human, 4 samples
1000927
GEM-X Flex v2 Human, 16 samples
1000928
GEM-X Flex v2 Human, 96 samples
1000929
GEM-X Flex v2 Human, 384 samples
1000930
GEM-X Flex v2 Mouse, 4 samples
1000931
GEM-X Flex v2 Mouse, 16 samples
1000932
GEM-X Flex v2 Mouse, 96 samples
1000933
GEM-X Flex v2 Mouse 384 samples
1000919
GEM-X Flex Gel bead & Library Kit v2, 4 rxn
Additional Reagents
1000900
GEM-X Flex Human Transcriptome Probe Kit v2, 16 samples
1000902
GEM-X Flex Mouse Transcriptome Probe Kit v2, 16 samples
1000937
GEM-X Flex Core Reagent Bundle v2, 96 rxns
Feature Barcoding Kit (optional)
1000628
Fixed RNA Feature Barcode Multiplexing Kit, 64 rxns
RNase Inhibitor (Optional)
1000887
Kit, RNase Inhibitor 40x
Documents and resources
Videos
Data analysis
Cell Ranger
Cell Ranger is a set of free analysis pipelines for processing Chromium Single Cell data.
Loupe Browser
Desktop application for Windows and MacOS that allows you to interactively visualize data.
Cloud Analysis
Cloud Analysis enables quick and easy access to Cell Ranger pipelines from your web browser.
Featured publications
Publications
Cancer Cell, 2024 Xin Huang, et al.
Cell Reports, 2024 Brendon D Parsons, et al.
Neuron, 2023 Josephine Fisher, et al.
Featured datasets
Datasets
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