The raw output data generated by the Xenium Onboard Analysis pipeline consists of decoded transcript counts and morphology images. These data reduce low level internal image sensor data, preserving details needed to assess decoded transcript quality (learn more at Overview of Xenium Algorithms). Raw output and other standard output files derived from them are included in the Xenium output directory for each selected region (listed below).
See what's new in the Xenium Onboard Analysis software pipeline. Click here to read the release notes.
|File type||File and description||Read in Xenium Explorer|
|Auxiliary outputs subfolder (|