10x Genomics Support/Single Cell Gene Expression Flex/Documentation/Experimental Design & Planning/

Single Cell FFPE Tested Tissues

The tissue types listed below were tested in-house using the Isolation of Cells from FFPE Tissue Sections for Chromium Fixed RNA Profiling Demonstrated Protocol (CG000632) followed by the Chromium Fixed RNA Profiling Reagent Kits for Singleplexed (CG000477) or Multiplexed Samples (CG000527) User Guide. Tissues tested in-house were accquired from biobanks.

Compatible

All tissues listed in this table consistently generated high quality data. Sample yield and final data quality are dependent on block properties such as fixation/embedding techniques and disease state.

OrganismTissueUnknown, Healthy, or DiseasedAdditional Information
HumanBrainDiseased, Glioblastoma
HumanBreastDiseased, Invasive Ductal Carcinoma
HumanCervixDiseased, Endocervical Adenocarcinoma
HumanColonDiseased, Colorectal Cancer
HumanKidneyHealthy
HumanLiverHealthy
HumanLiverDiseased, Hepatocellular Carcinoma
HumanLungHealthy
HumanLungDiseased, Cancer
HumanLymph nodeHealthy
HumanLymph nodeDiseased, Reactive
HumanOvaryDiseased, Cancer
HumanPancreasHealthy
HumanProstateDiseased, Cancer
HumanSkinDiseased, Malignant Melanoma
MouseBrainHealthyCerebellum
MouseBrainHealthyHippocampus
MouseKidneyHealthy
MouseLiverHealthy
MouseSpleenHealthy

Challenging

Tissues listed in this table generated variable data quality. These samples may be challenging to generate sufficient sample yield and/or quality data.

OrganismTissueUnknown, Healthy, DiseasedAdditional Information
HumanBrainHealthyLow usable data
HumanBreastHealthyLow usable data
Document Type
Specifications

Last Modified
December 16, 2022