Xenium Ranger is a set of analysis pipelines that process Xenium In Situ Gene Expression data to relabel, resegment, or import new segmentation results from community-developed tools. Updated results can be visualized in Xenium Explorer. It includes the following pipelines:
Each pipeline can be run individually or in combination.
Xenium Ranger (XR) is compatible with specific versions of the Xenium Onboard Analysis (XOA) pipeline outputs generated on the Xenium Analyzer (XA) instrument.
|XR v1.7||XR v1.6|
|XA v1.7 - v1.8||-|
|XA v1.5 - v1.6|
|XA v1.0 - v1.4||Partially supported*||Partially supported*|
*Output files or features that were added in more recent versions of the Xenium Onboard Analysis pipeline will not be generated for older versions. For example, Xenium Ranger will only produce the
aux_outputs/ directory or a transcript density plot in the
analysis_summary.html if they exist in the original XOA output bundle.