10x Genomics Support/Spatial Gene Expression for Fresh Frozen/Documentation/Tissue Staining/

Methanol Fixation, H&E Staining & Imaging for Visium Spatial Protocols

  • CG000160_DemonstratedProtocol_MethanolFixationandHEStaining_RevD.pdf

    Demonstrated Protocol, CG000160


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The Visium Spatial Gene Expression Solution measures the total mRNA in tissue sections and requires a Visium Spatial slide with intact tissue sections as input. This protocol outlines methanol fixation, Hematoxylin & Eosin (H&E) staining, and imaging of tissue for use with 10x Genomics Visium Spatial protocols. Fixed and stained tissue sections are inputs for the downstream Visium Spatial Tissue Optimization and Visium Spatial Gene Expression workflows.


  • Visium Spatial Tissue Optimization Slide & Reagent Kit, 4 slides PN-1000193
  • Visium Spatial Gene Expression Slide & Reagent Kit, 16 rxns PN-1000184
  • Visium Spatial Gene Expression Slide & Reagent Kit, 4 rxns PN-1000187
  • Visium Gateway Tissue Optimization Slide & Reagent Kits, 1 slide (PN-1000313, PN-1000314)
  • Visium Gateway Gene Expression Slide & Reagent Kit, 2 rxns PN-1000317
  • Visium Accessory Kit, PN-1000194
  • Dual Index Kit TT Set A, 96 rxns PN-1000215
Document Type
Demonstrated Protocol

Last Modified
September 22, 2023