HD Spatial Gene Expression
What is Visium HD Spatial Gene Expression?
Visium HD Spatial Gene Expression is a single cell scale, high resolution, CytAssist-enabled, whole transcriptome probe-based assay compatible with mouse or human FFPE tissue sections placed on glass slides.
Documentation
Find resources, from protocols to free-to-use analysis tools.
Plan ahead by referring to the list of equipment, kits, and reagents needed for the Visium HD Spatial Gene Expression protocols.
Best practices for handling FFPE tissue samples and generating tissue slides. Protocol outlines deparaffinization, staining, and decrosslinking of tissue sections.
For imaging hardware, general image acquisition and analysis guidelines, and example images.
Find a list of probes targeting protein-coding genes in human or mouse transcriptome for the Visium HD Spatial Gene Expression assay.
Construct a sequencing-ready Visium spatial library from your FFPE tissue sections.
Refer to instrument-specific documents for seamless instrument operation.
Sequence your Visium spatial library as per our provided recommendations.
Analyze your Visium spatial data using our pipelines and visualization tools.
Datasets
Access free, publicly available data from a number of different sample types generated with Visium Spatial solutions
Q&A
Find answers to common technical questions, from sample prep through data analysis, about Visium spatial workflows.
