HD Spatial Gene Expression
What is Visium HD Spatial Gene Expression?
Single cell scale resolution whole transcriptome probe-based gene expression assay compatible with FFPE, Fresh Frozen, & Fixed Frozen tissue sections.
Documentation
Find resources, from protocols to free-to-use analysis tools.
Plan ahead by referring to the list of equipment, kits, and reagents needed for the Visium HD Spatial Gene Expression protocols.
Best practices for handling FFPE tissue samples and generating tissue slides. Protocol outlines deparaffinization, staining, and decrosslinking of tissue sections.
Best practices for preparing and handling Fixed Frozen tissue samples and generating tissue slides. Protocol outlines rehydration, staining, and decrosslinking of tissue sections.
Best practices for preparing and handling Fresh Frozen tissue samples and generating tissue slides. Protocol outlines fixation, staining, and permeabilization of tissue sections.
For imaging hardware, general image acquisition and analysis guidelines, and example images.
Find a list of probes targeting protein-coding genes in human or mouse transcriptome for the Visium HD Spatial Gene Expression assay.
Construct a sequencing-ready Visium HD spatial library from your FFPE, Fresh Frozen, or Fixed Frozen tissue sections.
Refer to instrument-specific documents for seamless instrument operation.
Sequence your Visium spatial library as per our provided recommendations.
Analyze your Visium spatial data using our pipelines and visualization tools.
Datasets
Access free, publicly available data from a number of different sample types generated with Visium Spatial solutions
Q&A
Find answers to common technical questions, from sample prep through data analysis, about Visium spatial workflows.
