Built to deliver exceptional image and data quality
Features state-of-the-art image acquisition and high-resolution optics with a nanometer-level localization precision.
Provides industry-leading throughput, up to 7x faster than other platforms
Generates best-in-class spatially resolved single cell gene expression data, at the fastest speeds per mm2. Analyze up to 236 mm2 per slide and up to 1,400 mm² per week.
Converts terabytes of 3D imaging data into biologically meaningful insights
One-of-a-kind onboard analysis software performs high-powered computation on-instrument. Internal image sensor data is converted into ready-to-explore formats as soon your run finishes.
Delivers an unparalleled user experience
Simple run setup and cleanup operations, an intuitive touchscreen, and ergonomic design make instrument operation a breeze.
Expands with upcoming innovations
Flexible fluidic architecture allows the Xenium Analyzer to leverage new functionalities, assay enhancements, and more.
The ultimate single cell spatial biology experience
Dimensions (W x D x H)
52.5” x 27” x 31” (59” with door open)
133.3 cm x 68.5 cm x 78.7 cm (149.8 cm with door open)
Transcript XY-localization precision < 30 nm and Z-localization precision< 100 nm
Pixel size = ~0.2 µm/pixel
Number of slides per run
Throughput (area per time)
400 mm² in less than 50 hoursExplore Runtime Planner
Total tissue area analyzable per run
~ 470 mm²
2–3 days sample prep, under 50 hour run time for 4 cm² of tissue on the Xenium Analyzer
Data output file formats
Cell-feature matrices: MEX, HDF5, Zarr
Transcripts and segmentation boundaries: CSV, Parquet, Zarr
Tissue images: OME-TIFF
Compatible with 10x Genomics Cloud instrument management
The science behind Xenium
See what Xenium users are saying
Xenium In Situ Platform
Building on our years of innovation in single cell and spatial technologies, Xenium was designed to transform the way researchers can characterize RNA, protein, and cells in their native tissue environment.