HD WT Panel Gene Expression
Recommended Visium assay for differential gene expression in human, mouse, and rat
Analyze large tissues or multiple tissues per slide with 11 x 11 mm Capture Area option
Why choose HD WT Panel Gene Expression
Broad tissue compatibility including FFPE, fresh frozen, and fixed frozen
Most sequencing-efficient Visium HD assay
Assay specifications
Mouse
Human
Rat
Species
FFPE tissue
Fresh frozen tissue
Fixed frozen tissue
Compatible samples
Probe-based gene expression
Protein
Morphology
Multiomics
Compatible instruments
Throughput options
Capture Area size: 6.5 x 6.5 mm
Capture Area size: 11 x 11 mm
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HD WT Panel Gene Expression
Documents and resources
User guides
Sample prep
Technical notes
Sequencing requirements
The final gene expression library is sequenced at a recommended minimum depth of 275 million read pairs for 6.5 mm Capture Areas or 825 million read pairs for 11 mm Capture Areas fully covered by tissue.
Analysis guides
Resources
Fixed and fresh frozen launch webinar
Your introduction to Visium HD: Spatial biology in high definition
Getting started with Visium HD data analysis and third-party tools
Data analysis
Space Ranger Analysis Pipelines
Free analysis pipelines that process the input file types to align Visium sequencing data with the tissue image and perform optional cell segmentation.
Loupe Browser
Desktop application for Windows and MacOS that allows you to interactively visualize data.
Cloud Analysis
Cloud Analysis enables quick and easy access to Cell Ranger pipelines from your web browser.
Featured datasets
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