Visium Spatial
HD WT Panel Gene Expression
Next-generation Visium HD technology–powered assay with protein coding gene coverage and archival tissue compatibility.
Recommended Visium assay for differential gene expression in human and mouse
Single cell–scale resolution
Why choose HD WT Panel Gene Expression
Assay specifications
Species
Mouse
HumanCompatible samples
FFPE tissue
Fresh frozen tissue
Fixed frozen tissueMultiomics
Probe-based gene expression
Protein
MorphologyCompatible instruments
Throughput options
Assay components
Each experiment requires Visium HD slides, core reagents, and the Visium CytAssist instrument. If you’re unsure what you need, use the experiment builder to find the custom list of items required for your experiment.
Consumables
Index Kit
1000251
Dual Index Kit TS Set A, 96 rxn
Core Slides and Reagents
1000675
Visium HD, Human Transcriptome, 6.5 mm, 4 rxns
1000673
Visium HD, Human Transcriptome, 6.5 mm, 16 rxns
1000676
Visium HD, Mouse Transcriptome, 6.5 mm, 4 rxns
1000674
Visium HD, Mouse Transcriptome, 6.5 mm, 16 rxns
Starter Kits and Accessories
1000469
Visium 6.5mm Slide Cassette, 4 pk
1000470
Visium 11mm Slide Cassette, 4 pk
1000471
Visium CytAssist Tissue Slide Cassette, 4 pk, 6.5 mm
1000472
Visium CytAssist Tissue Slide Cassette, 4 pk, 11 mm
RNAase Inhibitor (Optional)
1000887
Kit, RNase Inhibitor 40x
Documents and resources
User guides
Technical notes
Sequencing requirements
The final gene expression library is sequenced at a recommended minimum depth of 275 million read pairs for Capture Areas fully covered by tissue.
View moreResources
Data analysis
Space Ranger Analysis Pipelines
Free analysis pipelines that process the input file types to align Visium sequencing data with the tissue image.
Learn about Space Ranger
Loupe Browser
Desktop application for Windows and MacOS that allows you to interactively visualize data.
Download Loupe Browser
Cloud Analysis
Cloud Analysis enables quick and easy access to Cell Ranger pipelines from your web browser
Learn more about Cloud AnalysisFeatured datasets
Visium HD Spatial Gene Expression Libraries, Post-Xenium, Human Lung Cancer (FFPE)
View datasetVisium HD Spatial Gene Expression Library, Human Breast Cancer (Fresh Frozen)
View datasetVisium HD Spatial Gene Expression Library, Mouse Brain (Fresh Frozen)
View datasetRelated products
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Visium v2 WT Panel
A proven probe-based solution for whole transcriptome spatial gene expression across tissue conditions, with options for multiomic analysis
Visium v1 3’
Our original 3' poly(A) whole transcriptome spatial gene expression assay