A [Web Uploader](https://support.10xgenomics.com/cloud-analysis/web-uploader) tool is now available on Cloud Analysis, enabling you to quickly upload FASTQ files using drag-and-drop functionality in your web browser, bypassing the command line interface (CLI) tool. The [CLI option](https://support.10xgenomics.com/cloud-analysis/uploading-fastqs) is still available, and may be preferable for large numbers of files.

March 30, 2022

Cell Ranger ARC 2.0.0 and 2.0.1 are now available on Cloud Analysis. This pipeline enables the analysis of 10x Genomics Single Cell Multiome datasets.

March 2, 2022

Analysis of Targeted Gene Expression data is now supported in Cloud Analysis! You are also able to aggregate datasets that were generated using our CellPlex Multiplexing Solution.

Finally, we added the ability to automatically generate commands to download output files using the 10x Genomics Cloud CLI.

Read more about the different download options available in Cloud Analysis on our [file download documentation](https://support.10xgenomics.com/cloud-analysis/file-download#download-options).

January 19, 2022

A new version of the 10x Genomics Cloud CLI is now available! This release (version 1.2.0) allows you to download your analysis output files directly through the command line. This download option contains benefits over the alternatives, such as the ability to resume failed or interrupted downloads.

Additionally, this version of the 10x Genomics Cloud CLI fixes a bug where FASTQ files that are larger than 50 GB would stall using the default command.

To download this update, visit the [10x Genomics Cloud CLI documentation](https://support.10xgenomics.com/cloud-analysis/txg-documentation).

December 22, 2021

You are now able to aggregate your Single Cell V(D)J libraries on Cloud Analysis! After your `cellranger vdj` analyses complete, select the 'Aggregate Multiple Analysis' button above the Analyses table to begin the setup process.

November 30, 2021

Cell Ranger version 6.1.2 is now available as the default version in Cloud Analysis, while older versions remain available. This Cell Ranger release contains a number of bug fixes. Read about the changes in Cell Ranger 6.1.2 in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/6.1/release-notes).

We also made it easier to assign library and feature types to your FASTQ sets. Select any number of rows from the FASTQ table inside each project, then use the dropdown selector at the top of the table to assign values to multiple FASTQ sets at the same time!

October 28, 2021

We've updated Cloud Analysis to provide substantial speed and responsiveness improvements to projects with large numbers of FASTQ files.

September 29, 2021

The `cellranger multi` pipeline is now available on Cloud Analysis! Analyze your datasets that use cell multiplexing, or analyze datasets that include V(D)J repertoire, cell surface protein, antigen specificity and 5' gene expression data together in a single pipeline. Learn more about `cellranger multi` on the [Cell Ranger Documentation for Single Cell Gene Expression](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/multi) and on the [Cell Ranger Documentation for Single Cell Immune Profiling](https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/using/multi).

When you register your Chromium X/iX, you can now view useful summary statistics about your instrument usage on 10x Genomics Cloud!

September 15, 2021

Cell Ranger version 6.1.1 is now available as the default Cell Ranger version in Cloud Analysis. This release contains a bug fix for the `cellranger vdj` pipeline that would cause it to fail in certain circumstances.

You are now able to view and download detailed run log information for your Chromium X or Chromium iX if you choose to automatically upload logs from your device.

August 18, 2021

Cell Ranger version 6.1.0 with High Throughput Kit support is now available as the default Cell Ranger version in Cloud Analysis! Learn more about the new High Throughput Kit within the [Cell Ranger Documentation for HT](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-HT) and read about the changes in Cell Ranger 6.1.0 in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/6.1/release-notes).

We are excited to launch a newest service on the 10x Genomics Cloud: the 10x Genomics Cloud Instruments portal is available today at [https://cloud.10xgenomics.com/instruments/](https://cloud.10xgenomics.com/instruments). This platform is used to register your Chromium X, access the latest firmware and documentation, and soon you will be able to view and download your instrument's run logs if you choose to register your Chromium X/iX to your 10x Genomics Cloud account!

August 9, 2021

Cell Ranger version 6.0.2 is now available as the default Cell Ranger version in Cloud Analysis. Details about the changes in Cell Ranger 6.0.2 are available in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/6.0/release-notes). Older Cell Ranger versions, including versions 6.0.1 and 6.0.0, are still available for use in Cloud Analysis.

June 23, 2021

We've added support for custom mouse panels with our Targeted Gene Expression product! Compatible with Single Cell Gene Expression and Immune Profiling assays, you can now design and order a fully custom mouse panel with our Custom Panel Designer! Learn more about Targeted Gene Expression [here](/products/targeted-gene-expression) or design your mouse panel today on the [Custom Panel Designer](https://cloud.10xgenomics.com/custom-panel-designer).

June 2, 2021

Support for custom references is now available in Cloud Analysis! You can upload a custom reference transcriptome that you have created with either the `cellranger mkref` or `cellranger mkvdjref` pipelines and use this as a reference in your analyses. In the future, we will be expanding this feature and making it even easier for you to add non-human and non-mouse references to your 10x Genomics account for use in analyses.

To learn more about use of custom references in Cloud Analysis, please refer to our [documentation](https://support.10xgenomics.com/cloud-analysis/custom-references).

May 17, 2021



This update includes the newest Cell Ranger release and support for additional pipelines and products.

* Cell Ranger version 6.0.1 is now available as the default Cell Ranger version in Cloud Analysis. This release includes a number of general improvements and bug fixes that are documented in the [Cell Ranger 6.0 Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/6.0/release-notes). Older Cell Ranger versions are still available to use.
* Aggregation of analyses including Feature Barcode data is now supported in Cloud Analysis.
* Single Cell 3' Gene Expression LT (Low Throughput) datasets are now officially supported in Cloud Analysis.

April 14, 2021

You can now analyze your Feature Barcode data in Cloud Analysis!

* Upload your datasets that include Cell Surface Proteins, Antigen Specificity, or CRISPR Guide Capture, then setup and run [count (Feature Barcode)](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/feature-bc-analysis) in Cloud Analysis.
* Improved data management: delete FASTQ files, analyses, and whole projects from your account.
* We have added new output files with ongoing free storage and downloads. See the full list of files with free ongoing storage [here](https://support.10xgenomics.com/cloud-analysis/billing#saved-files).

March 31, 2021

Cell Ranger 6.0 is now available in Cloud Analysis! This is the new default Cell Ranger version for count, aggr, reanalyze, and vdj pipelines. You can still select older versions when setting up your analysis. For full details about supported pipelines and versions in Cloud Analysis, read more [here](https://support.10xgenomics.com/cloud-analysis/supported-products). To learn more about what's new in Cell Ranger 6.0, please read the [Cell Ranger 6.0 Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/6.0/release-notes).

March 3, 2021

We fixed an issue where the Cell Ranger version used to analyze data was the most recent version 5.0.1 but the user interface displayed version 5.0.0. We've also updated our Windows installation and usage instructions for the 10x Genomics Cloud CLI.

February 18, 2021

Cloud Analysis is now available to all users in the United States! This update contains a number of exciting new features including:

* A beta version of the 10x Genomics Cloud CLI for Windows is now available. You can download the Windows versions [here](https://support.10xgenomics.com/cloud-analysis/txg-documentation).
* You are now able to download your FASTQ files. Select a row in the FASTQ table and click the download icon above to reveal `curl` and `wget` commands.

February 11, 2021

We've added support for the `cellranger vdj` pipeline, and now have support for Cell Ranger versions 5.0, 4.0, & 3.1 in Cloud Analysis.

* Single Cell V(D)J libraries can now be analyzed on Cloud Analysis using the Cell Ranger V(D)J pipeline.
* Cell Ranger version 5.0 is the new default version for the count, aggr, reanalyze, and vdj pipelines. When you configure the settings for an analysis, you can still select versions 4.0 or 3.1 if you would like to use an older version of Cell Ranger.
* Improvements to the process of aggregating multiple analyses. Now, you can only select analyses that are eligible for aggregation. We filter out `reanalyze` and `aggr` analyses, which are not valid inputs to Cell Ranger aggr.

January 20, 2021

We fixed a small issue in our design tool that resulted in some 121 nucleotide baits when designing for exogenous sequences, while the maximum length should be 120 nucleotides.

The issue should not have impacted any experimental results, but it could have impacted turnover time when ordering this panel through oligo providers such as IDT.

December 9, 2020

We've addressed a few small bugs that have been identified thanks to our Early Access users.

* Fixed a bug in the 10x Genomics Cloud CLI that prevented users from attempting to retry failed uploads.
* Fixed a bug where users may encounter a blank page after transferring a project to another user.

November 30, 2020

We just announced compatibility of Targeted Gene Expression products with Visium Spatial Gene Expression! To go along with this announcement, we have also added a new Human Neuroscience Panel. You can now add on to this panel in a custom design with additional genes and exogenous sequences of interest. Pease note that fully custom panels are not supported for targeted experiments with Visium Spatial Gene Expression.

October 27, 2020

Cloud Analysis is now available for Early Access users! Cloud Analysis will make it easier than ever to access and run 10x software, track and manage your experimental data and share that data with collaborators and researchers.

October 19, 2020

Recent Updates

Release Notes Archive

Cell Ranger 7.1.0 is now available in Cloud Analysis. Read about the changes in Cell Ranger 7.1.0 in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.1/release-notes). At this time, analysis of BEAM (Antigen Capture) datasets is not supported on Cloud Analysis. This functionality will be added to Cloud Analysis in a future update.

May 25, 2023

Cell Ranger 7.0.1 and Cell Ranger ARC 2.0.2 are now available in Cloud Analysis. Read about the changes in Cell Ranger 7.0.1 in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.0/release-notes) and the changes in Cell Ranger ARC 2.0.2 in the [Cell Ranger ARC Release Notes](https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/release-notes).

August 24, 2022

We are excited to expand the Cloud Instruments platform to support Visium CytAssist! Register your Visium CytAssist in order to access the latest firmware and documentation.

July 18, 2022

Cell Ranger version 7.0.0 is now available as the default Cell Ranger version in Cloud Analysis! Cell Ranger 7.0 includes support for Fixed RNA Profiling datasets. Learn more about the new Fixed RNA Profiling kit within the [Cell Ranger Documentation for Fixed RNA Profiling](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.0/what-is-frp) and read about the changes in Cell Ranger 7.0.0 in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.0/release-notes).

Additionally, you can now add custom library metadata to your `aggr` analyses in Cloud Analysis (e.g. lab or sample origin). These custom library annotations do not affect the analysis pipeline but can be visualized downstream in the Loupe Browser.

May 23, 2022

This update contains an exciting expansion: Cloud Analysis is now available in Canada!

We have also fixed a number of small bugs and added new functionality to the Web Uploader in this release.

April 27, 2022

Overview

Tutorials

FAQs

Release Notes

Billing

Supported Products

Cloud Analysis

Learn how to create a free account using the two different log-in options.

Account creation

Upload FASTQ files into your projects either using the Web Uploader.

Upload via Web Browser

Upload FASTQ files into your projects either using the 10x Genomics Cloud CLI.

Upload via CLI

In addition to the pre-built human and mouse reference packages available in Cloud Analysis, you can upload and use your own custom references in your Cloud Analysis projects.

Upload a reference

After uploading FASTQ files into your project in Cloud Analysis, you are ready to analyze your data.

Create analyses

You are given four unique options for downloading your output files for each completed analysis. These options have certain benefits and limitations that make them appropriate for different circumstances.

Download output files

Cloud Analysis allows you to transfer projects from your user account to another user account.

Transfer projects

The 10x Genomics Cloud CLI is a command line interface (CLI) that allows you to upload FASTQ files to projects in your 10x Genomics account, create projects from the command line, and manage other tasks related to your 10x Genomics account.

CLI Documentation

10x Genomics Cloud Analysis is a platform for data management, analysis, and collaboration to simplify and accelerate the interpretation of 10x Genomics datasets. Cloud Analysis makes it easier than ever to run 10x analysis pipelines and manage your experimental data.

What is Cloud Analysis?

<Text as={'p'} size={'small'} weight={'medium'}>If you are a member of a core lab or service provider, see <Anchor href={'/support/software/cloud-analysis/getting-started/CA-guidance-for-cores'}>{'how Cloud Analysis can help improve your workflow'}</Anchor>.</Text>

Projects are where you upload data and run analysis pipelines. People typically create projects for each experiment. You can upload different samples to a single project.

Create Projects

Upload FASTQ files either directly from your web browser or via the 10x Genomics Cloud CLI

Upload FASTQ files

After uploading, select the FASTQ sets that you want to use as analysis inputs. Then configure your pipeline settings and start the analysis.

Create Analyses

You can optionally receive an email when your analysis completes. When your results are ready, you can download the analysis outputs and explore your data using Loupe Browser or a variety of community analysis tools.

Download Results

10x Genomics pre-built human, mouse, and barnyard references are available for all users. You may optionally upload your own custom references to use in the analyses on your account

Optional workflow steps

We provide resources from protocols, user guides, and free-to-use analysis tools.

Find answers to frequently asked questions, including information about browser and operating system support.

We regularly add new features to 10x Genomics Cloud. Find details about the updates and improvements on this page.