Learn how to navigate the Loupe Browser interface with a pre-loaded lung carcinoma dataset and learn how to perform differential gene expression analysis.

Learn some of the important concepts specific to ATAC data.

Quick overview of the tutorials and example dataset used in this series.

Identify cell types from known markers by examining quantitative accessibility and importing feature lists.

Identify known immature and mature B Cell types in the dataset. This section builds on the work done in the Identifying Cell Types tutorial.

Using Peak Viewer to look at differential accessibility between cell subtypes.

Identifying significant features that distinguish clusters of interest.

Save the dataset workspace, custom clusters, and feature lists to the .cloupe.

Import and export projections, cluster labels, gene lists, and filters into and out of Loupe Browser.

Integrating information from different output files.

Examining differential chromatin accessibility across genomic regions of interest.