10x Genomics Support/Loupe Browser/Tutorials/

Tutorials for Single Cell Immune Profiling

Navigation
Learn how to navigate the Loupe Browser interface with a pre-loaded mouse brain dataset
Evaluate Gene Markers
Evaluate the expression profiles of known gene markers of interest in the context of tissue morphology using Loupe Browser
Explore Spatial Clusters
Evaluating image data and clustering in the spatial view with Loupe Browser
Characterize Substructure
Find subgroups within the clusters and perform differential gene expression with Loupe Browser
Spatial Reclustering
Interactive filtering and reclustering workflow for spatial datasets
Sharing Results
Share a dataset with colleagues
Protein Expression and Thresholding
Learn how to use protein expression to filter and visualize your data
Spot Deconvolution
Learn how to perform reference-free spot deconvolution using a public mouse brain dataset