Overview

Getting Started

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Xenium Ranger Commands

Analysis

Algorithms

Advanced

Release Notes

Xenium Onboard Analysis

Xenium Explorer

Datasets

Analysis Guides

Xenium Ranger 1.7

Xenium Ranger

Gene Expression

Analyze Xenium In Situ Gene Expression data with a set of easy-to-use analysis pipelines.

We provide resources from protocols, user guides, and free-to-use analysis tools.

Learn more about input files required for Xenium Ranger

Inputs

Learn how to run Xenium Ranger subcommands.

Running Pipelines

Guidance for choosing a Xenium Ranger pipeline.

Choosing a pipeline

Choosing a Pipeline

Relabel

Modify the Xenium Onboard Analysis cell segmentation results.

Resegment

Import segmentation results from community-developed tools.

Import-segmentation

Learn more about output files generated by Xenium Ranger

Outputs

The Xenium In Situ software suite is a set of software applications for analyzing and visualizing in situ gene expression data produced by the Xenium Analyzer. Xenium Ranger provides flexible off-instrument reanalysis of Xenium In Situ data. Relabel transcripts, resegment cells with the latest 10x segmentation algorithms, or import your own segmentation data to assign transcripts to cells.

What is Xenium Ranger?

View the latest updates to Xenium Ranger algorithms.

View the latest updates to Xenium Ranger.

Learn more about Xenium In Situ instrument analysis software.

Visualize data from Xenium In Situ solutions.

Browse Q&As from the 10x Genomics support team.

Access free, publicly available data generated with Xenium In Situ solutions.

A collection of introductions, tutorials, and blogs for data analysis beyond 10x Genomics software.