Xenium In Situ
5,000-gene panels
Xenium Prime chemistry–powered 5,000-gene panels provide high-plex targeted gene expression for broad single cell spatial discovery.
Explore diverse biological functions in human and mouse
Add on up to 100 custom genes
Why choose 5,000-gene panels
Assay specifications
Species
Mouse
HumanCompatible samples
FFPE tissue
Fresh frozen tissue
Tumor microarrays (TMAs)Same section capabilities
Probe-based gene expression
Protein (IF)
Morphology (H&E)Customization
Compatible instruments
Throughput options
<6 days per run
Ready-to-use panel options
Xenium Prime 5K Human Pan Tissue & Pathways Panel
Enables high-plex analysis of biological pathways, receptor–ligand pairs, cell–cell interactions, biomarkers, and more.
Xenium Prime 5K Mouse Pan Tissue & Pathways Panel
Enables high-plex analysis of biological pathways, receptor–ligand pairs, cell–cell interactions, biomarkers, and more.
Find a Xenium panel
The Xenium Panel Selector helps you find the right panel, letting you filter by and/or enter genes to check overlap with 10x Genomics pre-designed panels. It also highlights genes for custom add-on panels.
Assay components
Each experiment requires Xenium slides, core reagents, and the Xenium Analyzer instrument. If you're unsure what you need, use the experiment builder to compile a custom list of items required for your experiment.
Consumables
Xenium Prime 5K
1000671
Xenium Prime 5K Human Pan Tissue and Pathways Assay Kit (2 rxns)
1000672
Xenium Prime 5K Mouse Pan Tissue and Pathways Assay Kit (2 rxns)
1000731
Xenium Prime 5K Add-on Custom up to 50 Gene Panel (12 rxns)
1000766
Xenium Prime 5K Add-on Custom 51 to 100 Gene Panel (12 rxns)
1000739
Xenium Thermocycler Adaptor v2
Training
1000632
Xenium Analyzer Premium 3-Day Training Visit
Documents and resources
Customization
Resources
Multimodal spatial reconstruction of autoimmune diseases with 5,000-gene assays
Watch on-demand webinar
How TGen drastically reduced Xenium per-sample costs for large cohorts with tumor microarrays
Read the blogData analysis
Xenium Onboard Analysis
The Xenium platform processes data in parallel with imaging and biochemistry cycles, allowing immediate access to interpretation-ready data without time-consuming steps post-run.
Learn about Onboard Analysis
Xenium Ranger
With compatibility across multiple Linux distributions, the Xenium Ranger analysis pipelines make it easy to reanalyze your Onboard Analysis data and visualize it in Xenium Explorer.
Learn about Xenium Ranger
Xenium Explorer
Xenium Explorer is a desktop application for Windows and MacOS that allows you to interactively visualize data generated by the Xenium Analyzer instrument.
Download Xenium ExplorerFeatured datasets
FFPE Human Ovarian Cancer with 5K Human Pan Tissue and Pathways Panel plus 100 Custom Genes
View datasetFresh Frozen Mouse Brain Hemisphere with 5K Mouse Pan Tissue and Pathways Panel
View datasetFFPE Human Breast Cancer with 5K Human Pan Tissue and Pathways Panel plus 100 Custom Genes
View datasetRelated products
Xenium <500-gene panels
Ready-to-use and custom panels deliver mid-plex targeted gene expression and optional in-line protein expression for focused single cell spatial discovery.
Flex Gene Expression
Flex Gene Expression
Visium HD 3’
Species agnostic 3’ poly(A) capture-based spatial gene expression assay for expanded whole transcriptome discovery applications.