Product support
Chromium
- Universal 3'3' gene expression profiling at scale with single cell resolution.
- Universal 5'5' gene expression alongside V(D)J repertoire profiling and antigen specificity of T and B cells.
- FlexFixed RNA Profiling assay for comprehensive probe-based gene expression profiling with single cell resolution.
- Epi MultiomeCombined profiling of 3' gene expression and chromatin accessibility from the same nucleus.
- Epi ATACChromatin accessibilility profiling at the single cell level.
Visium
- HD 3’ Spatial Gene ExpressionCytAssist EnabledUnbiased whole transcriptome poly-A based gene expression assay at single cell scale, compatible with Fresh Frozen tissue sections
- HD Spatial Gene ExpressionCytAssist EnabledWhole transcriptome probe-based gene expression assay at single cell scale, compatible with FFPE, Fresh Frozen, and Fixed Frozen tissue sections
- CytAssist Spatial Gene ExpressionCytAssist EnabledProbe-based assay allowing simultaneous analysis of molecular and imaging data from FFPE, Fresh Frozen, and Fixed Frozen tissue sections.
- CytAssist Spatial Gene and Protein ExpressionCytAssist EnabledSimultaneous analysis of RNA and protein expression of FFPE tissues, using probe-based chemistry and tagged antibodies.
- Spatial Gene Expression for Fresh FrozenPoly-A based assay allowing simultaneous analysis of molecular and imaging data from fresh frozen tissue sections.
Scale
Instrument support
Chromium
Software support
10x Cloud
Pipeline
Cell RangerAnalyze single cell gene expression data with a set of free, easy-to-use analysis pipelines.
Cell Ranger ATACAnalyze Epi ATAC data to identify open chromatin regions, motif annotation, and differential accessibility.
Cell Ranger ARCAnalyze Epi Multiome data with a set of free, easy-to-use pipelines for primary and secondary analyses.
Space RangerAnalyze your Visium Spatial data with microscope images.
Xenium Onboard AnalysisDetails about the algorithms and output files for Xenium In Situ data.
Xenium RangerAnalyze Xenium In Situ data with a set of easy-to-use analysis pipelines.
Desktop Software
Loupe BrowserExplore 10x Genomics Chromium and Visium data with our interactive visualization software.
Loupe V(D)J BrowserInvestigate single cell 5' data clonotypes and V(D)J transcripts with our interactive visualization software.
Xenium ExplorerExplore Xenium In Situ data from the tissue scale down to subcellular resolution with our interactive visualization tool.