The Chromium Advantage

Single cell with confidence

See how the Chromium advantage can enable your lab

Higher quality data, proven results

A recent independent study comparing 9 scRNA-seq technologies found that, “overall, 10x FRP [Next GEM Flex] exhibited the highest ranked analytical performance followed by 10x 3' [Next GEM Universal 3'].” (1)

The newest version of Chromium (GEM-X) features higher sensitivity and more efficient sequencing than our previous Next GEM chemistry

Next GEM assays lead performance in independent data comparison

Source: Reprinted from De Simone et al., 2025, under Creative Commons License

Improving on leading Next GEM assays with GEM-X technology

Performance improvements for GEM-X Universal 3' (2024) versus Next GEM Universal 3' (2018).

Additional independent data for GEM-X assays

Explore data from the Fred Hutch Innovation Lab demonstrating the performance advancements for Chromium GEM-X assays over previous Next GEM technology.

Data for Universal 5' gene expression assays

Data for Universal 3' gene expression assays

GEM-X advancements versus Next GEM assays

Up to 2x

more genes

2x

more throughput

3x

faster run time

2x

lower multiplet rate

Recover more cells for more insights

Achieve up to 80% cell recovery efficiency for a wide array of cell types and samples, including FFPE, with GEM-X technology.

Make the most of your sample with GEM-X Universal 3’

Discover why high cell recovery matters

Chromium assays achieve targeted cell recovery with lowest cell input

Source: Reprinted from De Simone et al., 2025, under Creative Commons License

  • Identify rare cell types and detect rare transcripts

  • Improved detection of fragile cell types, including neutrophils

  • Achieve quality insights from precious samples and small cell volume

  • Recover up to 60% more of your sample compared to manual pipetting methods

Higher sequencing efficiency:
Detect more, sequence less

Direct comparison from an independent study show a higher proportion of on-target mapped reads and a lower proportion of unusable reads with Chromium assays, letting you reduce your sequencing budget.

Source: Reprinted from De Simone et al., 2025, under Creative Commons License

Source: Aggregated from Supplementary Table 4b from De Simone et al., 2025, under Creative Commons License

Scale without compromise

Perform small- to large-scale projects quickly and seamlessly, processing 1-128 samples or up to 2.56 million cells per run.

Profile 2.56 million cells per run, at <$0.01 per cell with GEM-X Flex

Get started at <$600 per sample, even at small scales, with easy On-Chip Multiplexing

Access the broadest range of multiomic applications and sample types

Profile fresh, frozen, and fixed samples—even FFPE—and tackle a wide range of analytes and applications with 40+ Demonstrated Protocols, optimized for your success.

Sample types

Cell suspensions

Fresh tissue

Frozen tissue

FFPE tissue

Multiomic capabilities

Gene expression

TCR & BCR sequencing

Cell surface protein

CRISPR screening

Chromatin accessibility

Flex chemistry enables high-quality profiling of FFPE tissue

Value of full-length V(D)J and gene expression readouts

View full list of compatible samples

User Guides & Demonstrated Protocols

Peace of mind with every run

Reduce errors and achieve high-quality data with exceptional reproducibility across experiments, users, and chips with our Chromium X instrument family—including a low-cost option to get you started.

Filippov et al. in BMC Genomics (2024) found that '10x showed higher cell capture efficiency and lower inter-sample variability'

Fast, efficient protocols let you complete your workflow in 1 day—half the time of manual methods

Maximize results, minimize hidden costs

Chromium instrument-supported methods

  • Ensures consistent performance across experiments, users, and chips.

  • Minimizes handling and user errors with fast and reliable workflows.

  • Makes the most of your precious samples with cell recovery rates of up to 80%.

  • Gives higher return on your sequencing budget by letting you reduce reads by up to 50%.

Instrument-less methods

  • Introduces variability across users and assays with manual protocols.

  • Relies on long workflows with labor-intensive, error-prone methods.

  • Misses critical data from important cell populations with low cell recovery rates.

  • Increases sequencing costs since lower sensitivity requires more reads.

Bring the Chromium advantage to your lab

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