Space Ranger - Official 10x Genomics Support

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10x Genomics Support/

Space Ranger

software-intro

What is Space Ranger?

Space Ranger is a set of analysis pipelines that process Visium Spatial Gene Expression data with brightfield and fluorescence microscope images. Space Ranger allows users to map the whole transcriptome in formalin fixed paraffin embedded (FFPE) and fresh frozen tissues to discover novel insights into normal development, disease pathology, and clinical translational research.

Download Space Ranger Get Started with Space Ranger

Analysis

Learn more about input files required to Space Ranger

Running Pipelines

Learn more about how to run Space Ranger

Learn more about the output files generated by Space Ranger

Tutorials

Set up Space Ranger

Get started with Space Ranger

Learn how to analyze Fresh Frozen samples with spaceranger

Learn how to analyze FFPE samples with spaceranger

View all tutorials

Algorithms overview

Overview of algorithms.

Advanced

Advanced pipeline content for Space Ranger.

Release Notes

View the latest updates to Space Ranger.

Q&A

Browse Q&As from the 10x Genomics support team.

Datasets

Access free public Visium data from 10x Genomics.

Analysis Guides

A collection of introductions, tutorials, and blogs for data analysis beyond software.

Loupe Browser

Loupe Browser is a desktop application that allows you to interactively visualize data.