v1 3' Gene Expression
Upgrade to Visium HD technology for single cell-scale resolution and gapless tissue coverage
First-generation slide architecture provides 1–10 cell resolution
Assay specifications
Agnostic
Species
Fresh frozen tissue
Compatible samples
3' Gene expression
Protein
Morphology
Isoform expression
TCR & BCR sequencing
Multiomics
Compatible instruments
Throughput options
Capture Area size: 6.5 x 6.5 mm
Assay components
Consumables
Index Kit
1000215
Dual Index Kit TT Set A, 96 rxn
Core Slides and Reagents
1000187
Visium Gene Expression Slide and Reagent Kit, 4 rxns
1000184
Visium Gene Expression Slide and Reagent Kit, 16 rxns
Starter Kits
1000193
Visium Tissue Optimization Slide and Reagent Kit, 4 slides
1000200
Visium Spatial Gene Expression Starter Kit
RNase Inhibitor (Optional)
1000887
Kit, RNase Inhibitor 40x
Documents and resources
User guides
Technical notes
Sequencing requirements
The final gene expression library is sequenced at a recommended minimum depth of 50K read pairs per capture spot covered by tissue. For some samples, fewer reads will be sufficient, while more complex samples may require more reads.
Analysis guides
Data analysis
Space Ranger Analysis Pipelines
Free analysis pipelines that process the input file types to align Visium sequencing data with the tissue image and perform optional cell segmentation.
Loupe Browser
Desktop application for Windows and MacOS that allows you to interactively visualize data.
Featured datasets
Related products
Visium HD WT Panel
Probe-based spatial gene expression assay for comprehensive differential gene expression at single cell scale.
Visium HD 3'
Species agnostic 3' poly(A) capture-based spatial gene expression assay for expanded whole transcriptome discovery applications.
Visium v2 WT Panel
First-generation Visium technology-powered assay with protein coding gene coverage and immuno-oncology protein panel.