Chromium Single Cell

Epi ATAC

Single cell profiling of open chromatin

10K nuclei/sample or 80K nuclei/chip

Run 8 samples in parallel

Why choose Epi ATAC?

  • Need open chromatin accessibility information only

Assay specifications

    Species

  • Mouse

  • Human

  • Rat

  • Non-human primate

  • Marine

  • Plant

  • Insect

    Compatible samples

  • Cell suspension

  • Nuclei suspension

  • Fresh tissue

  • Frozen tissue

  • Organoids

    Multiomics

  • Chromatin accessability

    Singleplex throughput options

  • 10K nuclei/sample

  • 80K nuclei/chip

  • 8 samples/chip

Assay components

Each experiment requires a chip, index kit, and core reagents. If you’re unsure what you need, use the experiment builder find the custom list of items required for your experiment.

Consumables


Nuclei Isolation (optional)

REAGENT

1000493

Chromium Nuclei Isolation Kit, 16rxns

Chip

CHIP

1000162

Chromium Next GEM Chip H Single Cell Kit, 16 rxns

CHIP

1000161

Chromium Next GEM Chip H Single Cell Kit, 48 rxns

Index Kit

REAGENT

1000212

Single Index Kit N Set A, 96 rxn

Core Reagents

REAGENT

1000406

Chromium Next GEM Single Cell ATAC Kit v2, 4 rxn

REAGENT

1000390

Chromium Next GEM Single Cell ATAC Kit v2, 16 rxn

Compatible Instruments


Chromium XChromium iX

Build your own Epi ATAC experiement

Design the experiment that's right for you

Documents and resources

Videos

Cell Ranger ATAC image

Cell Ranger ATAC

Cell Ranger ATAC is a set of free analysis pipelines for processing Chromium Single Cell ATAC data

Loupe Browser image

Loupe Browser

Desktop application for Windows and MacOS that allows you to interactively visualize data.

Featured publications

Flex

Fixed RNA Profiling assay for comprehensive probe-based gene expression profiling with single cell resolution.

Universal 5'

5' gene expression alongside V(D)J repertoire profiling and antigen specificity of T and B cells.

Universal 3'

3' gene expression profiling at scale with single cell resolution.

Epi Multiome ATAC + Gene Expression

Combined profiling of 3' gene expression and chromatin accessibility from the same cell.

Chromium Single Cell

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