Resources

Scientific Literature

Click on the arrow to view publication on PubMed. *Pre-prints are available at BioRxiv.

Publications

Genome-wide reconstruction of complex structural variants using read clouds

Spies N et al. Nat Methods 2017 July 17. doi: 10.1038/nmeth.4366. PMID: 28714986.

Intestinal enteroendocrine lineage cells possess homeostatic and injury-inducible stem cell activity

Yan KS et al. Cell Stem Cell. 2017 Jul 6;21(1):78-90.e6. doi: 10.1016/j.stem.2017.06.014. PMID: 28686870.

Integrative analysis of genomic alterations in triple-negative breast cancer in association with homologous recombination deficiency

Kawazu M et al. PLoS Genet. 2017 Jun 21;13(6):e1006853. doi: 10.1371/journal.pgen.1006853. PMID: 28636652.

*Pre-prints are available at BioRxiv.

Scientific Seminars

Perturb-seq: Single-cell CRISPRi screens interrogate the Unfolded Protein Response

Britt Adamson

University of California, San Francisco

March 21, 2017

User Group Meeting – San Francisco, CA

Genome assembly of the mind-controlling fly pathogen E. muscae via 10x Genomics

Carolyn Elya

University of California, Berkeley

March 21, 2017

User Group Meeting – San Francisco, CA

Genome-wide reconstruction of complex structural variants

Noah Spies

Stanford University

March 21, 2017

User Group Meeting – San Francisco, CA

Poster Hall

Long range applications with short read sequencing

American Society of Human Genetics (ASHG) Annual Meeting
Vancouver, BC
October 18 – 22, 2016
Advances in Genome Biology and Technology (AGBT) Precision Health Meeting
Scottsdale, AZ
September 22 – 24, 2016

Direct determination of genome sequences

Wellcome Trust Genome Informatics Conference
Cambridge, UK
September 19 – 22, 2016
The Biology of Genomes
Cold Spring Harbor, NY
May 10 – 14, 2016

Alignment and variant calling in segmental duplications with linked-read data

Wellcome Trust Genome Informatics Conference
Cambridge, UK
September 19 – 22, 2016